PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr038615.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 830aa    MW: 91841.9 Da    PI: 4.51
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr038615.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98.1e-532353701128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++++ePwdLpk   +k++++ew+fF++rd+ky++g+r+nrat++gyWkatgkd++++s+ 
  Pbr038615.1 235 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCRWEPWDLPKlsVIKSDDQEWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRq 331
                  699************************999.99***************5458889999**************************************98 PP

          NAM  96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +vg+kktLvfy+grapkge+t+W+mheyr+
  Pbr038615.1 332 cksasnSNGQVGMKKTLVFYRGRAPKGERTSWIMHEYRA 370
                  8777766667***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129213.94655117IPR011016Zinc finger, RING-CH-type
SMARTSM007446.1E-767111IPR011016Zinc finger, RING-CH-type
PfamPF129068.9E-969110IPR011016Zinc finger, RING-CH-type
SuperFamilySSF578509.36E-872112No hitNo description
Gene3DG3DSA:3.30.40.102.0E-977111IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF1019417.72E-61227393IPR003441NAC domain
PROSITE profilePS5100557.46235393IPR003441NAC domain
PfamPF023655.7E-27236369IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 830 aa     Download sequence    Send to blast
MGGEKESENG ELLDLEKQQL GGGGPETSSL PSLATVDTVL PLQQVVVSGG ASSEVHEPPT  60
VTATVNFSEE EKDEVLIDLG CQCRGGLAKS HRSCIDAWFR SRGSNKCEIC QGVAANVASP  120
EAQPTASYWV WRVDSSYRSQ NRDRGCVSPL YVAFSILIGG LLLDVLISVT LGVSALPINI  180
IIGIIVVLGL GTALRLALEF FHEWSVRRVV RRVDASHTNV PLGYHPMAEL SMESLPLGFR  240
FRPTDEELIN HYLRLKINGR DSEVRVIPEI DVCRWEPWDL PKLSVIKSDD QEWFFFCPRD  300
RKYPNGHRSN RATDAGYWKA TGKDRTIKSR QCKSASNSNG QVGMKKTLVF YRGRAPKGER  360
TSWIMHEYRA TQKELDGTGP GQGAFVLCRL FHKPEEKADV PKYDEVEQTG LSPTPTKSSP  420
DESSDIIQET ATSEIQGENQ AEGIMRWLTD NSDNVTPDAL PPLPDFFMAS DVEDQGAVET  480
GIQGHLTMEE NPAFYESLGG PIDCKVFSPL HSQINAELEH FMGSPFTSDF GNYDNGLHFQ  540
DGTCELDVSL TELLDEFGNS HYESSCEEST SQKNLVIGNE TYLSGNACTT PPVNSCFNGA  600
WDNTDTNITQ HDLQRMASGL YNEQFGSEDL QNTSFGYWQA EAQALLDDQK PRMGKMADSY  660
LSECSFAEQF PVSSVNDGLD DSRSWNHGVD HVGGTGIKIR ARGPQLQPNT DNFVYQGTAA  720
RRLRLSVDRS SGSITNGNES DENYSREDDE VQSTITQPRE DIGQSPTSDE QEEEHAIFND  780
KEELSSRNNS INHGCDPDGR SRIMMTKKNY RAGIILLTMV VILMVEVES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D3e-442223937168NAC domain-containing protein 19
3swp_C3e-442223937168NAC domain-containing protein 19
3swp_B3e-442223937168NAC domain-containing protein 19
3swp_A3e-442223937168NAC domain-containing protein 19
3swm_D3e-442223937168NAC domain-containing protein 19
3swm_C3e-442223937168NAC domain-containing protein 19
3swm_B3e-442223937168NAC domain-containing protein 19
3swm_A3e-442223937168NAC domain-containing protein 19
4dul_B4e-442223934165NAC domain-containing protein 19
4dul_A4e-442223934165NAC domain-containing protein 19
1ut7_B4e-442223934165NO APICAL MERISTEM PROTEIN
1ut7_A4e-442223934165NO APICAL MERISTEM PROTEIN
1ut4_B4e-442223934165NO APICAL MERISTEM PROTEIN
1ut4_A4e-442223934165NO APICAL MERISTEM PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360232.10.0PREDICTED: uncharacterized protein LOC103950728
TrEMBLD9ZJA70.0D9ZJA7_MALDO; NAC domain class transcription factor
STRINGPOPTR_0011s15230.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-138NAC 014